J3_6YS5_002
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6YS5|1|3|A|972, 6YS5|1|3|G|973, 6YS5|1|3|A|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS5_002 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0729
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YS5|1|3|U|952
6YS5|1|3|U|953
6YS5|1|3|U|954
6YS5|1|3|A|955
6YS5|1|3|A|956
6YS5|1|3|U|957
6YS5|1|3|U|958
6YS5|1|3|C|959
*
6YS5|1|3|G|970
6YS5|1|3|A|971
6YS5|1|3|A|972
6YS5|1|3|G|973
6YS5|1|3|A|974
6YS5|1|3|A|975
6YS5|1|3|C|976
6YS5|1|3|C|977
6YS5|1|3|U|978
6YS5|1|3|U|979
6YS5|1|3|A|980
6YS5|1|3|C|981
*
6YS5|1|3|G|1218
6YS5|1|3|G|1219
6YS5|1|3|C|1220
6YS5|1|3|U|1221
6YS5|1|3|A|1222
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14
- Chain t
- 30S ribosomal protein S19
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