J3_6YS5_003

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6YS5|1|3|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS5_003 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1008

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6YS5|1|3|C|987
6YS5|1|3|U|988
6YS5|1|3|U|989
6YS5|1|3|G|990
*
6YS5|1|3|C|1042
6YS5|1|3|A|1043
6YS5|1|3|G|1044
*
6YS5|1|3|C|1207
6YS5|1|3|U|1208
6YS5|1|3|U|1209
6YS5|1|3|A|1210
6YS5|1|3|C|1211
6YS5|1|3|G|1212

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S14