J3_6YS5_004
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS5_004 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0987
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6YS5|1|3|C|1060
6YS5|1|3|G|1061
6YS5|1|3|U|1062
6YS5|1|3|C|1063
6YS5|1|3|A|1064
6YS5|1|3|G|1065
*
6YS5|1|3|C|1104
6YS5|1|3|G|1105
6YS5|1|3|C|1106
6YS5|1|3|A|1107
6YS5|1|3|A|1108
6YS5|1|3|C|1109
6YS5|1|3|C|1110
*
6YS5|1|3|G|1184
6YS5|1|3|A|1185
6YS5|1|3|C|1186
6YS5|1|3|G|1187
6YS5|1|3|A|1188
6YS5|1|3|C|1189
6YS5|1|3|G|1190
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14
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