J3_6YS5_005

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS5_005 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1533

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6YS5|1|3|U|1070
6YS5|1|3|G|1071
*
6YS5|1|3|U|1080
6YS5|1|3|G|1081
6YS5|1|3|U|1082
6YS5|1|3|U|1083
6YS5|1|3|G|1084
*
6YS5|1|3|C|1095
6YS5|1|3|G|1096
6YS5|1|3|C|1097
6YS5|1|3|A|1098
6YS5|1|3|A|1099

Current chains

Chain 3

16S ribosomal RNA

Nearby chains