J3_6YS5_008

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS5_008 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0708

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6YS5|1|3|C|933
6YS5|1|3|A|934
6YS5|1|3|A|935
6YS5|1|3|G|936
*
6YS5|1|3|C|1341
6YS5|1|3|U|1342
6YS5|1|3|A|1343
6YS5|1|3|G|1344
6YS5|1|3|U|1345
6YS5|1|3|A|1346
6YS5|1|3|A|1347
*
6YS5|1|3|U|1369
6YS5|1|3|G|1370
6YS5|1|3|A|1371
6YS5|1|3|A|1372
6YS5|1|3|U|1373
6YS5|1|3|A|1374
6YS5|1|3|C|1375
6YS5|1|3|G|1376

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9