J3_6YS5_011
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUU*AUACUGC*GAGGAAGGCG
- Length
- 20 nucleotides
- Bulged bases
- 6YS5|1|3|C|1180
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YS5_011 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1141
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YS5|1|3|U|1113
6YS5|1|3|U|1114
6YS5|1|3|U|1115
*
6YS5|1|3|A|1152
6YS5|1|3|U|1153
6YS5|1|3|A|1154
6YS5|1|3|C|1155
6YS5|1|3|U|1156
6YS5|1|3|G|1157
6YS5|1|3|C|1158
*
6YS5|1|3|G|1172
6YS5|1|3|A|1173
6YS5|1|3|G|1174
6YS5|1|3|G|1175
6YS5|1|3|A|1176
6YS5|1|3|A|1177
6YS5|1|3|G|1178
6YS5|1|3|G|1179
6YS5|1|3|C|1180
6YS5|1|3|G|1181
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14
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