J3_6YSI_001

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSI_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0509

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6YSI|1|1|G|30
6YSI|1|1|C|31
*
6YSI|1|1|G|466
6YSI|1|1|C|467
6YSI|1|1|G|468
6YSI|1|1|A|469
6YSI|1|1|A|470
6YSI|1|1|A|471
6YSI|1|1|A|472
6YSI|1|1|G|473
*
6YSI|1|1|C|501
6YSI|1|1|C|502

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L20

Chain O

50S ribosomal protein L22

Chain Q

50S ribosomal protein L24