3D structure

PDB id
6YSR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6YSR|1|A|U|34, 6YSR|1|A|U|448, 6YSR|1|A|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YSR_028 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1047
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6YSR|1|A|C|32
6YSR|1|A|C|33
6YSR|1|A|U|34
6YSR|1|A|G|35
*
6YSR|1|A|C|445
6YSR|1|A|G|446
6YSR|1|A|A|447
6YSR|1|A|U|448
6YSR|1|A|A|449
6YSR|1|A|G|450
6YSR|1|A|U|451
6YSR|1|A|G|452
6YSR|1|A|A|453
6YSR|1|A|A|454
6YSR|1|A|C|455
6YSR|1|A|C|456
6YSR|1|A|A|457
6YSR|1|A|G|458
6YSR|1|A|U|459
6YSR|1|A|A|460
6YSR|1|A|C|461
*
6YSR|1|A|G|468
6YSR|1|A|G|469
6YSR|1|A|A|470
6YSR|1|A|A|471
6YSR|1|A|A|472
6YSR|1|A|G|473

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain T
50S ribosomal protein L23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3661 s