3D structure

PDB id
6YSR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
6YSR|1|a|C|48, 6YSR|1|a|A|50, 6YSR|1|a|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YSR_033 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.1065
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6YSR|1|a|G|46
6YSR|1|a|C|47
6YSR|1|a|C|48
6YSR|1|a|U|49
6YSR|1|a|A|50
6YSR|1|a|A|51
6YSR|1|a|C|52
*
6YSR|1|a|G|359
6YSR|1|a|G|360
6YSR|1|a|G|361
6YSR|1|a|G|362
6YSR|1|a|A|363
6YSR|1|a|A|364
6YSR|1|a|U|365
6YSR|1|a|A|366
6YSR|1|a|U|367
*
6YSR|1|a|A|393
6YSR|1|a|G|394
6YSR|1|a|C|395

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain p
30S ribosomal protein S16

Coloring options:


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