J3_6YST_003

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6YST|1|A|U|686, 6YST|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YST_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3297

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6YST|1|A|U|683
6YST|1|A|G|684
6YST|1|A|A|685
6YST|1|A|U|686
6YST|1|A|C|687
6YST|1|A|U|688
6YST|1|A|A|689
*
6YST|1|A|U|773
6YST|1|A|G|774
6YST|1|A|G|775
*
6YST|1|A|C|791
6YST|1|A|A|792
6YST|1|A|A|793
6YST|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain v

Api137