3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YST_008 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0926
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

6YST|1|A|C|2091
6YST|1|A|U|2092
6YST|1|A|G|2093
*
6YST|1|A|C|2196
6YST|1|A|U|2197
6YST|1|A|A|2198
6YST|1|A|A|2199
6YST|1|A|C|2200
*
6YST|1|A|G|2223
6YST|1|A|G|2224
6YST|1|A|A|2225
6YST|1|A|C|2226
6YST|1|A|A|2227
6YST|1|A|G|2228

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain H
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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