3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YST_018 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1499
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6YST|1|a|C|936
6YST|1|a|A|937
6YST|1|a|A|938
6YST|1|a|G|939
*
6YST|1|a|C|1344
6YST|1|a|U|1345
6YST|1|a|A|1346
6YST|1|a|G|1347
6YST|1|a|U|1348
6YST|1|a|A|1349
6YST|1|a|A|1350
*
6YST|1|a|U|1372
6YST|1|a|G|1373
6YST|1|a|A|1374
6YST|1|a|A|1375
6YST|1|a|U|1376
6YST|1|a|A|1377
6YST|1|a|C|1378
6YST|1|a|G|1379

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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