J3_6YSU_003

3D structure

PDB id

6YSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6YSU|1|A|U|686, 6YSU|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YSU_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.2353

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6YSU|1|A|U|683
6YSU|1|A|G|684
6YSU|1|A|A|685
6YSU|1|A|U|686
6YSU|1|A|C|687
6YSU|1|A|U|688
6YSU|1|A|A|689
*
6YSU|1|A|U|773
6YSU|1|A|G|774
6YSU|1|A|G|775
*
6YSU|1|A|C|791
6YSU|1|A|A|792
6YSU|1|A|A|793
6YSU|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain v

Api137