J3_6YT9_003
3D structure
- PDB id
- 6YT9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UA*UACCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6YT9|1|2|U|720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YT9_003 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0637
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YT9|1|2|U|669
6YT9|1|2|A|670
*
6YT9|1|2|U|714
6YT9|1|2|A|715
6YT9|1|2|C|716
6YT9|1|2|C|717
6YT9|1|2|G|718
6YT9|1|2|A|719
6YT9|1|2|U|720
6YT9|1|2|G|721
6YT9|1|2|G|722
*
6YT9|1|2|C|729
6YT9|1|2|A|730
6YT9|1|2|G|731
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S6
- Chain l
- 30S ribosomal protein S11
- Chain p
- 30S ribosomal protein S15
- Chain s
- 30S ribosomal protein S18
- Chain v
- 30S ribosomal protein S21
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