3D structure

PDB id
6YTF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUU*AUAC*GGCG
Length
11 nucleotides
Bulged bases
6YTF|1|3|C|1180
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YTF_007 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.1412
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6YTF|1|3|U|1113
6YTF|1|3|U|1114
6YTF|1|3|U|1115
*
6YTF|1|3|A|1152
6YTF|1|3|U|1153
6YTF|1|3|A|1154
6YTF|1|3|C|1155
*
6YTF|1|3|G|1178
6YTF|1|3|G|1179
6YTF|1|3|C|1180
6YTF|1|3|G|1181

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S9
Chain k
30S ribosomal protein S10
Chain o
30S ribosomal protein S14

Coloring options:


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