J3_6Z1P_007

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAUA*UAAG*UAAUG

Length

15 nucleotides

Bulged bases

6Z1P|1|Ab|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_007 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.3534

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6Z1P|1|Ab|C|1172
6Z1P|1|Ab|U|1173
6Z1P|1|Ab|G|1174
6Z1P|1|Ab|A|1175
6Z1P|1|Ab|U|1176
6Z1P|1|Ab|A|1177
*
6Z1P|1|Ab|U|1387
6Z1P|1|Ab|A|1388
6Z1P|1|Ab|A|1389
6Z1P|1|Ab|G|1390
*
6Z1P|1|Ab|U|1400
6Z1P|1|Ab|A|1401
6Z1P|1|Ab|A|1402
6Z1P|1|Ab|U|1403
6Z1P|1|Ab|G|1404

Current chains

Chain Ab

LSU rRNA_2

Nearby chains