J3_6Z1P_014

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUC*GUUAAAG

Length

14 nucleotides

Bulged bases

6Z1P|1|Ab|A|2212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_014 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1248

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Ab|C|2211
6Z1P|1|Ab|A|2212
6Z1P|1|Ab|U|2213
6Z1P|1|Ab|C|2214
*
6Z1P|1|Ab|G|2239
6Z1P|1|Ab|U|2240
6Z1P|1|Ab|C|2241
*
6Z1P|1|Ab|G|2255
6Z1P|1|Ab|U|2256
6Z1P|1|Ab|U|2257
6Z1P|1|Ab|A|2258
6Z1P|1|Ab|A|2259
6Z1P|1|Ab|A|2260
6Z1P|1|Ab|G|2261

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ad

50S ribosomal protein L3

Chain Ap

Ribosomal protein L14