J3_6Z1P_020
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUUAAUGC*GCAAAAUCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6Z1P|1|Bb|A|953, 6Z1P|1|Bb|A|954, 6Z1P|1|Bb|A|956
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z1P_020 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1451
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z1P|1|Bb|U|933
6Z1P|1|Bb|U|934
6Z1P|1|Bb|U|935
6Z1P|1|Bb|A|936
6Z1P|1|Bb|A|937
6Z1P|1|Bb|U|938
6Z1P|1|Bb|G|939
6Z1P|1|Bb|C|940
*
6Z1P|1|Bb|G|951
6Z1P|1|Bb|C|952
6Z1P|1|Bb|A|953
6Z1P|1|Bb|A|954
6Z1P|1|Bb|A|955
6Z1P|1|Bb|A|956
6Z1P|1|Bb|U|957
6Z1P|1|Bb|C|958
6Z1P|1|Bb|U|959
6Z1P|1|Bb|U|960
6Z1P|1|Bb|A|961
6Z1P|1|Bb|C|962
*
6Z1P|1|Bb|G|1233
6Z1P|1|Bb|G|1234
6Z1P|1|Bb|C|1235
6Z1P|1|Bb|U|1236
6Z1P|1|Bb|A|1237
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain Bj
- Ymf59
- Chain Bm
- Ribosomal protein S13
- Chain Bn
- Ribosomal protein S14
- Chain Bs
- Ribosomal protein S19
Coloring options: