J3_6Z1P_022
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUCAG*UGCAACC*GCUGAAG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z1P_022 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1927
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Z1P|1|Bb|C|1036
6Z1P|1|Bb|G|1037
6Z1P|1|Bb|U|1038
6Z1P|1|Bb|C|1039
6Z1P|1|Bb|A|1040
6Z1P|1|Bb|G|1041
*
6Z1P|1|Bb|U|1082
6Z1P|1|Bb|G|1083
6Z1P|1|Bb|C|1084
6Z1P|1|Bb|A|1085
6Z1P|1|Bb|A|1086
6Z1P|1|Bb|C|1087
6Z1P|1|Bb|C|1088
*
6Z1P|1|Bb|G|1199
6Z1P|1|Bb|C|1200
6Z1P|1|Bb|U|1201
6Z1P|1|Bb|G|1202
6Z1P|1|Bb|A|1203
6Z1P|1|Bb|A|1204
6Z1P|1|Bb|G|1205
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BX
- Ribosomal protein S3
- Chain Bd
- Ymf64
- Chain Bf
- 30S ribosomal protein S5
- Chain Bi
- Ribosomal protein S9
- Chain Bj
- Ymf59
- Chain Bn
- Ribosomal protein S14
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