J3_6Z1P_023
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UG*UUUAG*UUUUUAA
- Length
- 14 nucleotides
- Bulged bases
- 6Z1P|1|Bb|A|1059, 6Z1P|1|Bb|U|1072, 6Z1P|1|Bb|U|1075
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z1P_023 not in the Motif Atlas
- Homologous match to J3_5J7L_009
- Geometric discrepancy: 0.4775
- The information below is about J3_5J7L_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.3
- Basepair signature
- cWW-cWW-tSS-F-F-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Z1P|1|Bb|U|1046
6Z1P|1|Bb|G|1047
*
6Z1P|1|Bb|U|1056
6Z1P|1|Bb|U|1057
6Z1P|1|Bb|U|1058
6Z1P|1|Bb|A|1059
6Z1P|1|Bb|G|1060
*
6Z1P|1|Bb|U|1071
6Z1P|1|Bb|U|1072
6Z1P|1|Bb|U|1073
6Z1P|1|Bb|U|1074
6Z1P|1|Bb|U|1075
6Z1P|1|Bb|A|1076
6Z1P|1|Bb|A|1077
Current chains
- Chain Bb
- SSU rRNA_2
Nearby chains
- Chain BB
- mS37
- Chain Bc
- Ymf73
- Chain Bd
- Ymf64
- Chain Bf
- 30S ribosomal protein S5
- Chain Bu
- mS23
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