J3_6Z1P_024
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUAG*CAAUAGAAAACAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 6Z1P|1|Aa|A|35, 6Z1P|1|Ab|U|352, 6Z1P|1|Ab|C|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z1P_024 not in the Motif Atlas
- Geometric match to J3_7A0S_016
- Geometric discrepancy: 0.2568
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6Z1P|1|Aa|C|33
6Z1P|1|Aa|U|34
6Z1P|1|Aa|A|35
6Z1P|1|Aa|G|36
*
6Z1P|1|Ab|C|349
6Z1P|1|Ab|A|350
6Z1P|1|Ab|A|351
6Z1P|1|Ab|U|352
6Z1P|1|Ab|A|353
6Z1P|1|Ab|G|354
6Z1P|1|Ab|A|355
6Z1P|1|Ab|A|356
6Z1P|1|Ab|A|357
6Z1P|1|Ab|A|358
6Z1P|1|Ab|C|359
6Z1P|1|Ab|A|360
6Z1P|1|Ab|G|361
6Z1P|1|Ab|U|362
6Z1P|1|Ab|A|363
6Z1P|1|Ab|C|364
*
6Z1P|1|Ab|G|371
6Z1P|1|Ab|G|372
6Z1P|1|Ab|A|373
6Z1P|1|Ab|A|374
6Z1P|1|Ab|A|375
6Z1P|1|Ab|G|376
Current chains
- Chain Aa
- LSU rRNA_1
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain AI
- Ribosomal protein L27
- Chain AT
- Signal peptide-binding domain protein
- Chain Ae
- 50S ribosomal protein L4
- Chain Ax
- Ribosomal protein L23, putative
- Chain Ay
- 50S ribosomal protein L24
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