J3_6Z1P_033

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUAAC*GAGGAAUUU*AGC

Length

19 nucleotides

Bulged bases

6Z1P|1|Ba|C|74, 6Z1P|1|Ba|A|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z1P_033 not in the Motif Atlas

Geometric match to J3_4LFB_014

Geometric discrepancy: 0.1596

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Ba|G|72
6Z1P|1|Ba|C|73
6Z1P|1|Ba|C|74
6Z1P|1|Ba|U|75
6Z1P|1|Ba|A|76
6Z1P|1|Ba|A|77
6Z1P|1|Ba|C|78
*
6Z1P|1|Bb|G|379
6Z1P|1|Bb|A|380
6Z1P|1|Bb|G|381
6Z1P|1|Bb|G|382
6Z1P|1|Bb|A|383
6Z1P|1|Bb|A|384
6Z1P|1|Bb|U|385
6Z1P|1|Bb|U|386
6Z1P|1|Bb|U|387
*
6Z1P|1|Bb|A|413
6Z1P|1|Bb|G|414
6Z1P|1|Bb|C|415

Current chains

Chain Ba

SSU rRNA_1

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bl

Ribosomal protein S12

Chain Bp

30S ribosomal protein S16