J3_6Z6J_001
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6Z6J|1|C1|U|117, 6Z6J|1|C1|G|120, 6Z6J|1|C1|A|121, 6Z6J|1|C1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0909
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6Z6J|1|C1|C|113
6Z6J|1|C1|A|114
6Z6J|1|C1|A|115
6Z6J|1|C1|A|116
6Z6J|1|C1|U|117
6Z6J|1|C1|U|118
6Z6J|1|C1|U|119
6Z6J|1|C1|G|120
6Z6J|1|C1|A|121
6Z6J|1|C1|A|122
6Z6J|1|C1|A|123
*
6Z6J|1|C1|U|149
6Z6J|1|C1|A|150
6Z6J|1|C1|A|151
6Z6J|1|C1|U|152
6Z6J|1|C1|U|153
6Z6J|1|C1|U|154
6Z6J|1|C1|G|155
6Z6J|1|C1|G|156
6Z6J|1|C1|A|157
6Z6J|1|C1|G|158
*
6Z6J|1|C1|C|263
6Z6J|1|C1|G|264
6Z6J|1|C1|A|265
6Z6J|1|C1|A|266
6Z6J|1|C1|G|267
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L8-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Li
- 60S ribosomal protein L36-A
Coloring options: