J3_6Z6J_002
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1023
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6Z6J|1|C1|A|369
6Z6J|1|C1|U|370
6Z6J|1|C1|G|371
6Z6J|1|C1|A|372
6Z6J|1|C1|A|373
6Z6J|1|C1|A|374
6Z6J|1|C1|A|375
6Z6J|1|C1|G|376
*
6Z6J|1|C1|C|403
6Z6J|1|C1|G|404
*
6Z6J|1|C3|C|19
6Z6J|1|C3|U|20
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: