J3_6Z6J_003
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6Z6J|1|C1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.0974
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6Z6J|1|C1|U|502
6Z6J|1|C1|C|503
*
6Z6J|1|C1|G|588
6Z6J|1|C1|A|589
6Z6J|1|C1|G|590
6Z6J|1|C1|G|591
6Z6J|1|C1|A|592
6Z6J|1|C1|C|593
6Z6J|1|C1|U|594
6Z6J|1|C1|G|595
6Z6J|1|C1|C|596
6Z6J|1|C1|G|597
*
6Z6J|1|C1|C|606
6Z6J|1|C1|A|607
6Z6J|1|C1|A|608
6Z6J|1|C1|G|609
6Z6J|1|C1|G|610
6Z6J|1|C1|A|611
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LE
- 60S ribosomal protein L6-A
- Chain LF
- 60S ribosomal protein L7-A
- Chain Le
- 60S ribosomal protein L32
Coloring options: