J3_6Z6J_011

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6J_011 not in the Motif Atlas

Geometric match to J3_5TBW_090

Geometric discrepancy: 0.1452

The information below is about J3_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C1|C|1631
6Z6J|1|C1|A|1632
*
6Z6J|1|C1|U|1641
6Z6J|1|C1|A|1642
6Z6J|1|C1|A|1643
6Z6J|1|C1|C|1644
6Z6J|1|C1|U|1645
*
6Z6J|1|C1|A|1810
6Z6J|1|C1|G|1811

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A