J3_6Z6J_025
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 6Z6J|1|C2|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_025 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1743
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C2|U|1283
6Z6J|1|C2|C|1284
6Z6J|1|C2|U|1285
6Z6J|1|C2|U|1286
6Z6J|1|C2|A|1287
6Z6J|1|C2|G|1288
*
6Z6J|1|C2|C|1327
6Z6J|1|C2|G|1328
6Z6J|1|C2|A|1329
6Z6J|1|C2|G|1330
6Z6J|1|C2|A|1331
6Z6J|1|C2|C|1332
*
6Z6J|1|C2|G|1419
6Z6J|1|C2|C|1420
6Z6J|1|C2|A|1421
6Z6J|1|C2|A|1422
6Z6J|1|C2|U|1423
6Z6J|1|C2|A|1424
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29-A
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