3D structure

PDB id
6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
6Z6J|1|C2|U|1473
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Z6J_028 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.2549
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6Z6J|1|C2|C|1470
6Z6J|1|C2|A|1471
6Z6J|1|C2|C|1472
6Z6J|1|C2|U|1473
6Z6J|1|C2|G|1474
*
6Z6J|1|C2|C|1533
6Z6J|1|C2|G|1534
6Z6J|1|C2|U|1535
6Z6J|1|C2|G|1536
6Z6J|1|C2|C|1537
6Z6J|1|C2|U|1538
6Z6J|1|C2|G|1539
6Z6J|1|C2|G|1540
*
6Z6J|1|C2|C|1571
6Z6J|1|C2|G|1572
6Z6J|1|C2|A|1573
6Z6J|1|C2|G|1574

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SF
40S ribosomal protein S5
Chain SS
40S ribosomal protein S18-A
Chain ST
40S ribosomal protein S19-A
Chain SZ
40S ribosomal protein S25-A

Coloring options:


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