J3_6Z6J_031
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6Z6J|1|C1|U|343, 6Z6J|1|C1|A|351, 6Z6J|1|C3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_031 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0622
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
6Z6J|1|C1|C|340
6Z6J|1|C1|G|341
6Z6J|1|C1|A|342
6Z6J|1|C1|U|343
6Z6J|1|C1|A|344
6Z6J|1|C1|G|345
6Z6J|1|C1|C|346
6Z6J|1|C1|G|347
6Z6J|1|C1|A|348
6Z6J|1|C1|A|349
6Z6J|1|C1|C|350
6Z6J|1|C1|A|351
6Z6J|1|C1|A|352
6Z6J|1|C1|G|353
6Z6J|1|C1|U|354
6Z6J|1|C1|A|355
6Z6J|1|C1|C|356
*
6Z6J|1|C1|G|363
6Z6J|1|C1|G|364
6Z6J|1|C1|A|365
6Z6J|1|C1|A|366
6Z6J|1|C1|A|367
6Z6J|1|C1|G|368
*
6Z6J|1|C3|C|21
6Z6J|1|C3|U|22
6Z6J|1|C3|U|23
6Z6J|1|C3|G|24
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: