J3_6Z6J_035

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6J_035 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0996

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6Z6J|1|C1|A|1654
6Z6J|1|C1|G|1655
6Z6J|1|C1|A|1656
6Z6J|1|C1|C|1657
6Z6J|1|C1|G|1658
*
6Z6J|1|C1|C|1791
6Z6J|1|C1|C|1792
*
6Z6J|1|C1|G|1796
6Z6J|1|C1|A|1797
6Z6J|1|C1|A|1798
6Z6J|1|C1|A|1799
6Z6J|1|C1|A|1800
6Z6J|1|C1|U|1801

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain Lg

60S ribosomal protein L34-A

Chain Lp

60S ribosomal protein L43-A