J3_6Z6J_043
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCACC*GGGCCG
- Length
- 27 nucleotides
- Bulged bases
- 6Z6J|1|C2|G|1199, 6Z6J|1|C2|G|1201, 6Z6J|1|C2|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6J_043 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.2316
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6Z6J|1|C2|C|1180
6Z6J|1|C2|U|1181
6Z6J|1|C2|U|1182
6Z6J|1|C2|A|1183
6Z6J|1|C2|A|1184
6Z6J|1|C2|U|1185
6Z6J|1|C2|U|1186
6Z6J|1|C2|U|1187
*
6Z6J|1|C2|G|1198
6Z6J|1|C2|G|1199
6Z6J|1|C2|G|1200
6Z6J|1|C2|G|1201
6Z6J|1|C2|A|1202
6Z6J|1|C2|A|1203
6Z6J|1|C2|A|1204
6Z6J|1|C2|C|1205
6Z6J|1|C2|U|1206
6Z6J|1|C2|C|1207
6Z6J|1|C2|A|1208
6Z6J|1|C2|C|1209
6Z6J|1|C2|C|1210
*
6Z6J|1|C2|G|1453
6Z6J|1|C2|G|1454
6Z6J|1|C2|G|1455
6Z6J|1|C2|C|1456
6Z6J|1|C2|C|1457
6Z6J|1|C2|G|1458
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29-A
Coloring options: