J3_6Z6K_005

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6K_005 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1271

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6Z6K|1|C1|U|829
6Z6K|1|C1|A|830
6Z6K|1|C1|G|831
*
6Z6K|1|C1|C|863
6Z6K|1|C1|G|864
6Z6K|1|C1|U|865
6Z6K|1|C1|A|866
6Z6K|1|C1|G|867
*
6Z6K|1|C1|U|892
6Z6K|1|C1|C|893
6Z6K|1|C1|G|894
6Z6K|1|C1|A|895

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LR

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L34-A