3D structure

PDB id
6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAC*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
6Z6K|1|C1|A|1259
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Z6K_007 not in the Motif Atlas
Homologous match to J3_5TBW_007
Geometric discrepancy: 0.2386
The information below is about J3_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.3
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
7

Unit IDs

6Z6K|1|C1|G|1230
6Z6K|1|C1|A|1231
6Z6K|1|C1|C|1232
*
6Z6K|1|C1|G|1256
6Z6K|1|C1|C|1257
6Z6K|1|C1|U|1258
6Z6K|1|C1|A|1259
6Z6K|1|C1|A|1260
6Z6K|1|C1|G|1261
6Z6K|1|C1|G|1262
*
6Z6K|1|C1|C|1277
6Z6K|1|C1|A|1278
6Z6K|1|C1|C|1279

Current chains

Chain C1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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