J3_6Z6K_007

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

6Z6K|1|C1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6K_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2386

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6Z6K|1|C1|G|1230
6Z6K|1|C1|A|1231
6Z6K|1|C1|C|1232
*
6Z6K|1|C1|G|1256
6Z6K|1|C1|C|1257
6Z6K|1|C1|U|1258
6Z6K|1|C1|A|1259
6Z6K|1|C1|A|1260
6Z6K|1|C1|G|1261
6Z6K|1|C1|G|1262
*
6Z6K|1|C1|C|1277
6Z6K|1|C1|A|1278
6Z6K|1|C1|C|1279

Current chains

Chain C1

25S rRNA

Nearby chains