J3_6Z6K_012
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6K_012 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2662
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6Z6K|1|C1|A|2432
6Z6K|1|C1|U|2433
6Z6K|1|C1|U|2434
6Z6K|1|C1|G|2435
*
6Z6K|1|C1|C|2512
6Z6K|1|C1|U|2513
6Z6K|1|C1|U|2514
6Z6K|1|C1|A|2515
6Z6K|1|C1|U|2516
*
6Z6K|1|C1|A|2591
6Z6K|1|C1|G|2592
6Z6K|1|C1|A|2593
6Z6K|1|C1|C|2594
6Z6K|1|C1|A|2595
6Z6K|1|C1|U|2596
6Z6K|1|C1|U|2597
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L8-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain Li
- 60S ribosomal protein L36-A
Coloring options: