J3_6Z6K_034
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6Z6K|1|C1|A|398, 6Z6K|1|C1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6K_034 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0959
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6Z6K|1|C1|A|369
6Z6K|1|C1|U|370
6Z6K|1|C1|G|371
6Z6K|1|C1|A|372
6Z6K|1|C1|A|373
6Z6K|1|C1|A|374
6Z6K|1|C1|A|375
6Z6K|1|C1|G|376
6Z6K|1|C1|A|377
6Z6K|1|C1|A|378
6Z6K|1|C1|C|379
*
6Z6K|1|C1|G|390
6Z6K|1|C1|A|391
6Z6K|1|C1|G|392
6Z6K|1|C1|U|393
6Z6K|1|C1|G|394
6Z6K|1|C1|A|395
6Z6K|1|C1|A|396
6Z6K|1|C1|A|397
6Z6K|1|C1|A|398
6Z6K|1|C1|A|399
6Z6K|1|C1|G|400
6Z6K|1|C1|U|401
6Z6K|1|C1|A|402
6Z6K|1|C1|C|403
6Z6K|1|C1|G|404
*
6Z6K|1|C3|C|19
6Z6K|1|C3|U|20
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LP
- 60S ribosomal protein L17-A
- Chain LY
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: