J3_6Z6K_044
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 6Z6K|1|C2|U|1390, 6Z6K|1|C2|U|1413, 6Z6K|1|C2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Z6K_044 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1806
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6Z6K|1|C2|A|1336
6Z6K|1|C2|A|1337
6Z6K|1|C2|C|1338
*
6Z6K|1|C2|G|1386
6Z6K|1|C2|G|1387
6Z6K|1|C2|A|1388
6Z6K|1|C2|C|1389
6Z6K|1|C2|U|1390
6Z6K|1|C2|A|1391
*
6Z6K|1|C2|U|1407
6Z6K|1|C2|G|1408
6Z6K|1|C2|G|1409
6Z6K|1|C2|A|1410
6Z6K|1|C2|A|1411
6Z6K|1|C2|G|1412
6Z6K|1|C2|U|1413
6Z6K|1|C2|U|1414
6Z6K|1|C2|U|1415
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SF
- Rps5p
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-A
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sg
- Guanine nucleotide-binding protein subunit beta-like protein
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