3D structure

PDB id
6Z6L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of human CCDC124 bound to 80S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
6Z6L|1|L5|U|354, 6Z6L|1|L5|A|362, 6Z6L|1|L8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Z6L_031 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0569
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

6Z6L|1|L5|C|351
6Z6L|1|L5|G|352
6Z6L|1|L5|A|353
6Z6L|1|L5|U|354
6Z6L|1|L5|A|355
6Z6L|1|L5|G|356
6Z6L|1|L5|U|357
6Z6L|1|L5|C|358
6Z6L|1|L5|A|359
6Z6L|1|L5|A|360
6Z6L|1|L5|C|361
6Z6L|1|L5|A|362
6Z6L|1|L5|A|363
6Z6L|1|L5|G|364
6Z6L|1|L5|U|365
6Z6L|1|L5|A|366
6Z6L|1|L5|C|367
*
6Z6L|1|L5|G|374
6Z6L|1|L5|G|375
6Z6L|1|L5|A|376
6Z6L|1|L5|A|377
6Z6L|1|L5|A|378
6Z6L|1|L5|G|379
*
6Z6L|1|L8|C|21
6Z6L|1|L8|U|22
6Z6L|1|L8|C|23
6Z6L|1|L8|G|24

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LY
60S ribosomal protein L26
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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