J3_6Z6L_034

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

6Z6L|1|L5|A|1805, 6Z6L|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6L_034 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4403

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6Z6L|1|L5|U|1726
6Z6L|1|L5|U|1727
*
6Z6L|1|L5|A|1802
6Z6L|1|L5|G|1803
6Z6L|1|L5|A|1804
6Z6L|1|L5|A|1805
6Z6L|1|L5|G|1806
*
6Z6L|1|L5|C|1832
6Z6L|1|L5|G|1833
6Z6L|1|L5|U|1834
6Z6L|1|L5|G|1835
6Z6L|1|L5|G|1836
6Z6L|1|L5|A|1837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29