J3_6Z6L_039

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6Z6L|1|L5|U|4882, 6Z6L|1|L5|A|4938, 6Z6L|1|L5|C|4940, 6Z6L|1|L5|A|4943, 6Z6L|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Z6L|1|L5|G|4751
6Z6L|1|L5|U|4752
6Z6L|1|L5|U|4753
6Z6L|1|L5|G|4754
*
6Z6L|1|L5|C|4879
6Z6L|1|L5|C|4880
6Z6L|1|L5|U|4881
6Z6L|1|L5|U|4882
6Z6L|1|L5|C|4883
*
6Z6L|1|L5|G|4936
6Z6L|1|L5|C|4937
6Z6L|1|L5|A|4938
6Z6L|1|L5|C|4939
6Z6L|1|L5|C|4940
6Z6L|1|L5|G|4941
6Z6L|1|L5|C|4942
6Z6L|1|L5|A|4943
6Z6L|1|L5|C|4944
6Z6L|1|L5|G|4945
6Z6L|1|L5|U|4946
6Z6L|1|L5|U|4947
6Z6L|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a