J3_6Z6M_006

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6M_006 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2309

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6Z6M|1|L5|G|1969
6Z6M|1|L5|A|1970
6Z6M|1|L5|C|1971
*
6Z6M|1|L5|G|1995
6Z6M|1|L5|C|1996
6Z6M|1|L5|U|1997
6Z6M|1|L5|A|1998
6Z6M|1|L5|A|1999
6Z6M|1|L5|G|2000
6Z6M|1|L5|G|2001
*
6Z6M|1|L5|C|2016
6Z6M|1|L5|A|2017
6Z6M|1|L5|C|2018

Current chains

Chain L5

28S rRNA

Nearby chains