J3_6Z6M_036

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

6Z6M|1|L5|C|2470, 6Z6M|1|L5|A|2472, 6Z6M|1|L5|G|2475, 6Z6M|1|L5|G|2503, 6Z6M|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6M_036 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5886

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6Z6M|1|L5|A|2451
6Z6M|1|L5|G|2452
6Z6M|1|L5|A|2453
6Z6M|1|L5|U|2454
6Z6M|1|L5|G|2455
6Z6M|1|L5|G|2456
*
6Z6M|1|L5|C|2465
6Z6M|1|L5|G|2466
6Z6M|1|L5|U|2467
6Z6M|1|L5|U|2468
6Z6M|1|L5|C|2469
6Z6M|1|L5|C|2470
6Z6M|1|L5|G|2471
6Z6M|1|L5|A|2472
6Z6M|1|L5|A|2473
6Z6M|1|L5|G|2474
6Z6M|1|L5|G|2475
6Z6M|1|L5|G|2476
*
6Z6M|1|L5|C|2501
6Z6M|1|L5|G|2502
6Z6M|1|L5|G|2503
6Z6M|1|L5|C|2504
6Z6M|1|L5|C|2505
6Z6M|1|L5|G|2506
6Z6M|1|L5|A|2507
6Z6M|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37