J3_6Z6M_037

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Z6M_037 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.144

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6Z6M|1|L5|A|2598
6Z6M|1|L5|G|2599
6Z6M|1|L5|A|2600
6Z6M|1|L5|A|2601
6Z6M|1|L5|G|2602
*
6Z6M|1|L5|C|2737
6Z6M|1|L5|C|2738
*
6Z6M|1|L5|G|2742
6Z6M|1|L5|A|2743
6Z6M|1|L5|A|2744
6Z6M|1|L5|A|2745
6Z6M|1|L5|A|2746
6Z6M|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a