J3_6ZCE_004

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

6ZCE|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZCE_004 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1325

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6ZCE|1|A|A|881
6ZCE|1|A|U|882
6ZCE|1|A|C|883
6ZCE|1|A|A|884
*
6ZCE|1|A|U|928
6ZCE|1|A|A|929
6ZCE|1|A|A|930
6ZCE|1|A|C|931
6ZCE|1|A|U|932
6ZCE|1|A|A|933
6ZCE|1|A|C|934
6ZCE|1|A|U|935
6ZCE|1|A|G|936
*
6ZCE|1|A|C|943
6ZCE|1|A|A|944
6ZCE|1|A|U|945
6ZCE|1|A|U|946
6ZCE|1|A|U|947

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain C

40S ribosomal protein S1-A

Chain P

40S ribosomal protein S14-A

Chain b

40S ribosomal protein S26-A