J3_6ZJ3_004
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UAC*GGU(OMC)G*CCUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_004 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1994
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LE|U|1128
6ZJ3|1|LE|A|1129
6ZJ3|1|LE|C|1130
*
6ZJ3|1|LE|G|1162
6ZJ3|1|LE|G|1163
6ZJ3|1|LE|U|1164
6ZJ3|1|LE|OMC|1165
6ZJ3|1|LE|G|1166
*
6ZJ3|1|LE|C|1192
6ZJ3|1|LE|C|1193
6ZJ3|1|LE|U|1194
6ZJ3|1|LE|G|1195
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LP
- Ribosomal protein uL2
- Chain Lf
- Ribosomal protein eL19
- Chain Lw
- Ribosomal protein eL34
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