J3_6ZJ3_007
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCGACC*G(OMG)CAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_007 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1445
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LF|C|1941
6ZJ3|1|LF|C|1942
6ZJ3|1|LF|G|1943
6ZJ3|1|LF|A|1944
6ZJ3|1|LF|C|1945
6ZJ3|1|LF|C|1946
*
6ZJ3|1|LG|G|2008
6ZJ3|1|LG|OMG|2009
6ZJ3|1|LG|C|2010
6ZJ3|1|LG|A|2011
6ZJ3|1|LG|A|2012
*
6ZJ3|1|LG|U|2031
6ZJ3|1|LG|G|2032
Current chains
- Chain LF
- LSU rRNA chain 5
- Chain LG
- LSU rRNA chain 6
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lk
- Ribosomal protein uL23
- Chain Lw
- Ribosomal protein eL34
- Chain Lz
- Ribosomal protein eL38
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