J3_6ZJ3_011
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUC*GAG*CAAAGG
- Length
- 12 nucleotides
- Bulged bases
- 6ZJ3|1|LI|A|3276, 6ZJ3|1|LI|G|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_011 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.3311
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZJ3|1|LI|C|3237
6ZJ3|1|LI|U|3238
6ZJ3|1|LI|C|3239
*
6ZJ3|1|LI|G|3263
6ZJ3|1|LI|A|3264
6ZJ3|1|LI|G|3265
*
6ZJ3|1|LI|C|3274
6ZJ3|1|LI|A|3275
6ZJ3|1|LI|A|3276
6ZJ3|1|LI|A|3277
6ZJ3|1|LI|G|3278
6ZJ3|1|LI|G|3279
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain LS
- Ribosomal protein uL5
- Chain Ld
- Ribosomal protein uL18
- Chain Lh
- Ribosomal protein eL21
- Chain S3
- Transfer RNA; tRNA
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