J3_6ZJ3_021
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- AG*CCACUGCAG*CGU
- Length
- 14 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_021 not in the Motif Atlas
- Geometric match to J3_1G1X_004
- Geometric discrepancy: 0.1908
- The information below is about J3_1G1X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|S1|A|1280
6ZJ3|1|S1|G|1281
*
6ZJ3|1|S1|C|1325
6ZJ3|1|S1|C|1326
6ZJ3|1|S1|A|1327
6ZJ3|1|S1|C|1328
6ZJ3|1|S1|U|1329
6ZJ3|1|S1|G|1330
6ZJ3|1|S1|C|1331
6ZJ3|1|S1|A|1332
6ZJ3|1|S1|G|1333
*
6ZJ3|1|S1|C|1340
6ZJ3|1|S1|G|1341
6ZJ3|1|S1|U|1342
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain L5
- Ribosomal protein eL42
- Chain LP
- Ribosomal protein uL2
- Chain SA
- Ribosomal protein eS1
- Chain SO
- Ribosomal protein uS11
- Chain Sb
- Ribosomal protein eS26
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