J3_6ZJ3_022
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAG*CAACG*CCACAG
- Length
- 15 nucleotides
- Bulged bases
- 6ZJ3|1|S1|A|1501, 6ZJ3|1|S1|A|1503
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_022 not in the Motif Atlas
- Geometric match to J3_4WF9_005
- Geometric discrepancy: 0.3156
- The information below is about J3_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68164.1
- Basepair signature
- cWW-tSH-F-F-tHW-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6ZJ3|1|S1|C|1436
6ZJ3|1|S1|C|1437
6ZJ3|1|S1|A|1438
6ZJ3|1|S1|G|1439
*
6ZJ3|1|S1|C|1477
6ZJ3|1|S1|A|1489
6ZJ3|1|S1|A|1490
6ZJ3|1|S1|C|1491
6ZJ3|1|S1|G|1492
*
6ZJ3|1|S1|C|1499
6ZJ3|1|S1|C|1500
6ZJ3|1|S1|A|1501
6ZJ3|1|S1|C|1502
6ZJ3|1|S1|A|1503
6ZJ3|1|S1|G|1504
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SB
- Ribosomal protein uS2
- Chain SF
- Ribosomal protein uS5
- Chain SJ
- Ribosomal protein uS8
- Chain ST
- Ribosomal protein uS15
- Chain SY
- Ribosomal protein eS21
- Chain Sb
- Ribosomal protein eS26
- Chain Sc
- Ribosomal protein eS27
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