J3_6ZJ3_027

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UG*UG(PSU)C*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZJ3_027 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.2633

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.5

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6ZJ3|1|S1|U|1703
6ZJ3|1|S1|G|1704
*
6ZJ3|1|S1|U|1713
6ZJ3|1|S1|G|1714
6ZJ3|1|S1|PSU|1715
6ZJ3|1|S1|C|1716
*
6ZJ3|1|S1|G|1728
6ZJ3|1|S1|A|1729
6ZJ3|1|S1|U|1730
6ZJ3|1|S1|A|1731
6ZJ3|1|S1|A|1732

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

Ribosomal protein uS2

Chain SF

Ribosomal protein uS5

Chain SV

Ribosomal protein eS17