J3_6ZJ3_028
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAUUG*CGUAC(OMU)GG*C(OMG)UG
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|S1|U|1958, 6ZJ3|1|S1|G|2042
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZJ3_028 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2798
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|S1|C|1955
6ZJ3|1|S1|A|1956
6ZJ3|1|S1|U|1957
6ZJ3|1|S1|U|1958
6ZJ3|1|S1|G|1959
*
6ZJ3|1|S1|C|2036
6ZJ3|1|S1|G|2037
6ZJ3|1|S1|U|2038
6ZJ3|1|S1|A|2039
6ZJ3|1|S1|C|2040
6ZJ3|1|S1|OMU|2041
6ZJ3|1|S1|G|2042
6ZJ3|1|S1|G|2043
*
6ZJ3|1|S1|C|2074
6ZJ3|1|S1|OMG|2075
6ZJ3|1|S1|U|2076
6ZJ3|1|S1|G|2077
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SH
- Ribosomal protein uS7
- Chain SR
- Ribosomal protein uS13
- Chain SX
- Ribosomal protein eS19
- Chain Sa
- Ribosomal protein eS25
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